Package: PBSmapping 2.74.2

Rowan Haigh

PBSmapping: Mapping Fisheries Data and Spatial Analysis Tools

This software has evolved from fisheries research conducted at the Pacific Biological Station (PBS) in 'Nanaimo', British Columbia, Canada. It extends the R language to include two-dimensional plotting features similar to those commonly available in a Geographic Information System (GIS). Embedded C code speeds algorithms from computational geometry, such as finding polygons that contain specified point events or converting between longitude-latitude and Universal Transverse Mercator (UTM) coordinates. Additionally, we include 'C++' code developed by Angus Johnson for the 'Clipper' library, data for a global shoreline, and other data sets in the public domain. Under the user's R library directory '.libPaths()', specifically in './PBSmapping/doc', a complete user's guide is offered and should be consulted to use package functions effectively.

Authors:Jon T. Schnute [aut], Nicholas Boers [aut], Rowan Haigh [aut, cre], Alex Couture-Beil [ctb], Denis Chabot [ctb], Chris Grandin [ctb], Alan Murta [ctb], Angus Johnson [ctb], Paul Wessel [ctb], Franklin Antonio [ctb], Nicholas J. Lewin-Koh [ctb], Roger Bivand [ctb], Sean Anderson [ctb]

PBSmapping_2.74.2.tar.gz
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PBSmapping_2.74.2.tgz(r-4.6-x86_64)PBSmapping_2.74.2.tgz(r-4.6-arm64)PBSmapping_2.74.2.tgz(r-4.5-x86_64)PBSmapping_2.74.2.tgz(r-4.5-arm64)
PBSmapping_2.74.2.tar.gz(r-4.7-arm64)PBSmapping_2.74.2.tar.gz(r-4.7-x86_64)PBSmapping_2.74.2.tar.gz(r-4.6-arm64)PBSmapping_2.74.2.tar.gz(r-4.6-x86_64)
PBSmapping_2.74.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PBSmapping/json (API)

# Install 'PBSmapping' in R:

install.packages('PBSmapping', repos = c('https://pbs-software.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pbs-software/pbs-mapping/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

bcBathymetry - Data: Bathymetry Spanning BC Coast
nepacLL - Data: Shorelines of the NE Pacific Ocean and of the World
nepacLLhigh - Data: Shorelines of the NE Pacific Ocean and of the World
pythagoras - Data: Pythagoras' Theorem Diagram PolySet
surveyData - Data: Tow Information from Pacific Ocean Perch Survey
towData - Data: Tow Information from Longspine Thornyhead Survey
towTracks - Data: Tow Track Polylines from Longspine Thornyhead Survey
worldLL - Data: Shorelines of the NE Pacific Ocean and of the World
worldLLhigh - Data: Shorelines of the NE Pacific Ocean and of the World

On CRAN:

cpp

9.76 score 11 stars 8 packages 908 scripts 1.6k downloads 11 mentions 120 exports 0 dependencies

Last updated from:ab7bd3d0c2. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	174
linux-devel-x86_64	OK	185
source / vignettes	OK	171
linux-release-arm64	OK	136
linux-release-x86_64	OK	127
macos-release-arm64	OK	92
macos-release-x86_64	OK	204
macos-oldrel-arm64	OK	94
macos-oldrel-x86_64	OK	177
windows-devel	OK	140
windows-release	OK	124
windows-oldrel	OK	161
wasm-release	OK	93

Exports:.addAxis .addAxis2 .addBubblesLegend .addCorners .addFeature .addLabels .addProps .calcDist .calcOrientation .checkClipLimits .checkProjection .checkRDeps .clip .closestPoint .createFastIDdig .createGridIDs .createIDs .expandEdges .fixGSHHSWorld .getBasename .getGridPars .initPlotRegion .insertNAs .is.in .mat2df .PBSfig01 .PBSfig02 .PBSfig03 .PBSfig04 .PBSfig05 .PBSfig06 .PBSfig07 .PBSfig08 .PBSfig09 .PBSfig10 .PBSfigs .PBSmapEnv .plotMaps .preparePolyProps .rollupPolys .validateData .validateEventData .validateLocationSet .validatePolyData .validatePolyProps .validatePolySet .validateXYData addBubbles addCompass addLabels addLines addPoints addPolys addStipples appendPolys as.EventData as.LocationSet as.PolyData as.PolySet calcArea calcCentroid calcConvexHull calcGCdist calcLength calcMidRange calcSummary calcVoronoi clipLines clipPolys closePolys combineEvents combinePolys convCP convDP convLP convUL dividePolys extractPolyData findCells findPolys fixBound fixPOS importEvents importGSHHS importLocs importPolys is.EventData is.LocationSet is.PolyData is.PolySet isConvex isIntersecting joinPolys locateEvents locatePolys makeGrid makeProps makeTopography PBSprint placeHoles plotLines plotMap plotPoints plotPolys print.EventData print.LocationSet print.PolyData print.PolySet print.summary.PBS refocusWorld RGB2RYB rotateEvents rotatePolys RYB2RGB summary.EventData summary.LocationSet summary.PolyData summary.PolySet thickenPolys thinPolys

Dependencies:

Introduction to PBSmapping

What is PBSmapping? | What is PBS? | Where is the User's Guide? | Demos

Rendered fromPBSmappingIntro.Rnwusingutils::Sweave

Last update: 2024-09-24
Started: 2013-05-01

Help page	Topics
Add Bubbles to Maps	addBubbles
Add Compass Rose to Map	addCompass
Add Labels to an Existing Plot	addLabels
Add a PolySet to an Existing Plot as Polylines	addLines
Add EventData/PolyData to an Existing Plot as Points	addPoints
Add Polygon PolySet to Existing Plot	.insertNAs .preparePolyProps .rollupPolys addPolys
Add Stipples to an Existing Plot	addStipples
Append a Two-Column Matrix to a PolySet	appendPolys
Data: Bathymetry Spanning BC Coast	bcBathymetry
Calculate the Areas of Polygons	calcArea
Calculate the Centroids of Polygons	calcCentroid
Calculate Convex Hull for a Set of Points	.closestPoint calcConvexHull
Calculate Great-Circle Distance	calcGCdist
Calculate the Length of Polylines	calcLength
Calculate the Midpoint of the X/Y Ranges of Polygons	calcMidRange
Apply Functions to Polygons in a PolySet	calcSummary
Calculate Voronoi Tesselation	.expandEdges calcVoronoi
Clip a PolySet as Polygons or Polylines	.clip clipLines clipPolys
Close a PolySet	closePolys
Combine Measurements of Events	combineEvents
Combine Several Polygons into a Single Polygon	combinePolys
Convert Contour Lines into a PolySet	convCP
Convert EventData/PolyData into a PolySet	convDP
Convert Polylines into a Polygon	convLP
Convert Coordinates between UTM and Lon/Lat	convUL
Divide a Single Polygon into Several Polygons	dividePolys
Add Items to Plots	.addAxis .addAxis2 .addBubblesLegend .addCorners .addFeature .addLabels .addProps
Calculate Things	.calcDist .calcOrientation
Check Stuff	.checkClipLimits .checkProjection .checkRDeps
Create Indices for PolySets	.createFastIDdig .createGridIDs .createIDs
Fix Things	.fixGSHHSWorld
Get Stuff	.getBasename .getGridPars
Are Points in Polygons?	.is.in
Convert Matrix to Data Frame	.mat2df
Run PBSmapping Example Figures	.PBSfig01 .PBSfig02 .PBSfig03 .PBSfig04 .PBSfig05 .PBSfig06 .PBSfig07 .PBSfig08 .PBSfig09 .PBSfig10 .PBSfigs
PBSmapping Environment	.PBSmapEnv
Validate PBSmapping Data Structures	.validateData .validateEventData .validateLocationSet .validatePolyData .validatePolyProps .validatePolySet .validateXYData
EventData Objects	as.EventData EventData is.EventData
Extract PolyData from a PolySet	extractPolyData
Find Grid Cells that Contain Events	findCells
Find Polygons that Contain Events	findPolys
Fix the Boundary Points of a PolySet	fixBound
Fix the POS Column of a PolySet	fixPOS
Import EventData from a Text File	importEvents
Import Data from a GSHHS Database	importGSHHS
Import LocationSet from Text File	importLocs
Import PolySet from Text File	importPolys
Determine Whether Polygons are Convex	isConvex
Determine Whether Polygons are Self-Intersecting	isIntersecting
Join One or Two PolySets using a Logic Operation	joinPolys
Locate Events on the Current Plot	locateEvents
Locate Polygons on the Current Plot	locatePolys
LocationSet Objects	as.LocationSet is.LocationSet LocationSet
Make a Grid of Polygons	makeGrid
Make Polygon Properties	makeProps
Make Topography Data from Online Source	makeTopography
Data: Shorelines of the NE Pacific Ocean and of the World	nepacLL nepacLLhigh worldLL worldLLhigh
PBS Mapping: Draw Maps and Implement Other GIS Procedures	PBSmapping-package PBSmapping
Specify Whether to Print Summaries	PBSprint
Place Holes Under Solids	placeHoles
Plot a PolySet as Polylines	plotLines
Plot a PolySet as a Map	.initPlotRegion .plotMaps plotMap
Plot EventData/PolyData as Points	plotPoints
Plot a PolySet as Polygons	plotPolys
PolyData Objects	as.PolyData is.PolyData PolyData
PolySet Objects	as.PolySet is.PolySet PolySet
Print PBS Mapping Objects	print.EventData print.LocationSet print.PolyData print.PolySet print.summary.PBS
Data: Pythagoras' Theorem Diagram PolySet	pythagoras
Refocus the 'worldLL'/'worldLLhigh' Data Sets	refocusWorld
Convert RGB to RYB and RYB to RGB	RGB2RYB RYB2RGB
Rotate Polygons and Events	rotateEvents rotatePolys
Summarize PBS Mapping Objects	summary.EventData summary.LocationSet summary.PolyData summary.PolySet
Data: Tow Information from Pacific Ocean Perch Survey	surveyData
Thicken a PolySet of Polygons	thickenPolys
Thin a PolySet of Polygons	thinPolys
Data: Tow Information from Longspine Thornyhead Survey	towData
Data: Tow Track Polylines from Longspine Thornyhead Survey	towTracks

Package: PBSmapping 2.74.2

PBSmapping: Mapping Fisheries Data and Spatial Analysis Tools

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