{
  "_id": "6a533c919b92047c28d56f14",
  "Package": "PBSadmb",
  "Version": "1.1.8",
  "Date": "2025-11-14",
  "Title": "ADMB for R Using Scripts or GUI",
  "Authors@R": "c(\nperson(c(\"Jon\", \"T.\"), \"Schnute\", role = \"aut\", email = \"schnutej@shaw.ca\"),\nperson(\"Rowan\", \"Haigh\", role = c(\"aut\"), email = \"rowan.haigh@dfo-mpo.gc.ca\"),\nperson(\"Alex\", \"Couture-Beil\", role = \"aut\", email = \"alex@mofo.ca\"),\nperson(\"Anisa\",\"Egeli\",role=\"ctb\",email=\"aegeli@gmail.com\"),\nperson(\"Nick\", \"Fisch\", role = \"cre\", email = \"nick.fisch@dfo-mpo.gc.ca\")\n)",
  "Author": "Jon T. Schnute [aut], Rowan Haigh [aut], Alex Couture-Beil\n[aut], Anisa Egeli [ctb], Nick Fisch [cre]",
  "Maintainer": "Nick Fisch <nick.fisch@dfo-mpo.gc.ca>",
  "Copyright": "2008-2025, Fisheries and Oceans Canada",
  "Description": "A collection of software provides R support for 'ADMB'\n(Automatic Differentiation Model Builder) and a 'GUI' interface\nfacilitates the conversion of 'ADMB' template code to 'C code'\nfollowed by compilation to a binary executable. Stand-alone\nfunctions can also be run by users not interested in clicking a\n'GUI'.",
  "License": "GPL (>=2)",
  "URL": "https://github.com/pbs-software/pbs-admb,\nhttps://github.com/pbs-software/pbs-modelling",
  "Config/pak/sysreqs": "libxml2-dev",
  "Repository": "https://pbs-software.r-universe.dev",
  "Date/Publication": "2025-11-14 20:26:19 UTC",
  "RemoteUrl": "https://github.com/pbs-software/pbs-admb",
  "RemoteRef": "HEAD",
  "RemoteSha": "2c9c60d19e53758e1da4ea3662dad1941106fda9",
  "RemoteSubdir": "PBSadmb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-12 07:01:39 UTC",
    "User": "root"
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  "_type": "src",
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  "_created": "2026-07-12T07:01:39.000Z",
  "_published": "2026-07-12T07:04:49.294Z",
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    "author": "haighr <rowan.haigh@dfo-mpo.gc.ca>",
    "committer": "haighr <rowan.haigh@dfo-mpo.gc.ca>",
    "message": "PBSadmb 1.1.8 (2025-11-14) [Rcheck=T, Rbuild=T]\n  * R code\n    + Removed explicit reference to PBSmodelling namespace (using :::) because PBSmodelling now exports all dot functions (RH 251114)\n  * Package\n    + Notified the CRAN Team that NF will be taking over as the new Maintainer (RH 251112)\n    + NF checked PBSadmb 1.1.8 using rhub:rhub_platforms() on 5 virtual machines and 26 containers\n    + No reverse dependencies\n",
    "time": 1763151979
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  "_usedby": 0,
  "_updates": [
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  "_stars": 1,
  "_contributors": [
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      "count": 55,
      "uuid": 6942554
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    "type": "organization",
    "name": "PBS Software",
    "followers": 6,
    "description": "Software, largely for R, developed at the Pacific Biological Station"
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PBSadmb"
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
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    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/pbs-software/pbs-admb",
  "_realowner": "pbs-software",
  "_cranurl": true,
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      "date": "2009-11-25"
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    },
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      "date": "2012-11-09"
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      "date": "2013-05-15"
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      "date": "2019-03-19"
    },
    {
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      "date": "2023-11-11"
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    ".asIs",
    ".callSys",
    ".changeWD",
    ".changeWDEnter",
    ".chooseCols",
    ".cleanUp",
    ".cleanUpAgain",
    ".cleanWD",
    ".doCleanAD",
    ".getDirName",
    ".initOptions",
    ".load.prefix.droplist",
    ".normPath",
    ".PBSadmbEnv",
    ".setPath",
    ".version",
    ".win.appendLog",
    ".win.checkADopts",
    ".win.checkADpath",
    ".win.checkPrefix",
    ".win.cleanAD",
    ".win.compAD",
    ".win.convAD",
    ".win.editAD",
    ".win.editPLT",
    ".win.findClean",
    ".win.findTPL",
    ".win.linkAD",
    ".win.makeAD",
    ".win.plotMC",
    ".win.readADpaths",
    ".win.readRep",
    ".win.run",
    ".win.runAD",
    ".win.runMC",
    ".win.saveADpaths",
    ".win.setADpath",
    ".win.setADver",
    ".win.showADargs",
    ".win.showGUIargs",
    ".win.startLog",
    ".win.suggestPath",
    ".win.viewRep",
    "admb",
    "alisp",
    "appendLog",
    "atcall",
    "atget",
    "atprint",
    "atput",
    "checkADopts",
    "cleanAD",
    "compAD",
    "convAD",
    "convOS",
    "copyFiles",
    "editAD",
    "editADfile",
    "linkAD",
    "makeAD",
    "plotMC",
    "readADopts",
    "readADpaths",
    "readRep",
    "runAD",
    "runMC",
    "saveADpaths",
    "setADpath",
    "setADver",
    "setupAD",
    "showADargs",
    "startLog",
    "suggestPath",
    "writeADopts"
  ],
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    {
      "page": "admb",
      "title": "Start the PBSadmb GUI for ADMB",
      "concept": [
        "ADMB",
        "GUI"
      ],
      "topics": [
        "admb"
      ]
    },
    {
      "page": "appendLog",
      "title": "Append Data to Log File",
      "topics": [
        ".win.appendLog",
        "appendLog"
      ]
    },
    {
      "page": "atget",
      "title": "Get/Put Objects From/To Temporary Work Environment",
      "topics": [
        "alisp",
        "atcall",
        "atget",
        "atprint",
        "atput"
      ]
    },
    {
      "page": "checkADopts",
      "title": "Check ADMB Options for Path Integrity",
      "concept": [
        "options"
      ],
      "topics": [
        ".win.checkADopts",
        ".win.checkADpath",
        "checkADopts"
      ]
    },
    {
      "page": "cleanAD",
      "title": "Clean ADMB-Generated Files from Working Directory",
      "topics": [
        ".cleanUp",
        ".cleanUpAgain",
        ".cleanWD",
        ".doCleanAD",
        ".win.cleanAD",
        ".win.findClean",
        "cleanAD"
      ]
    },
    {
      "page": "compAD",
      "title": "Compile C Code",
      "concept": [
        "ADMB"
      ],
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        ".win.compAD",
        "compAD"
      ]
    },
    {
      "page": "convAD",
      "title": "Convert TPL Code to CPP Code",
      "concept": [
        "ADMB"
      ],
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        ".win.convAD",
        ".win.findTPL",
        "convAD"
      ]
    },
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      "title": "Convert Text Files to Default OS Format",
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      ]
    },
    {
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      "title": "Copy System Files",
      "topics": [
        "copyFiles"
      ]
    },
    {
      "page": "dot-funs",
      "title": "Miscellaneous Dot Functions",
      "concept": [
        "hidden"
      ],
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        ".addQuotes",
        ".asIs",
        ".callSys",
        ".changeWD",
        ".changeWDEnter",
        ".chooseCols",
        ".getDirName",
        ".load.prefix.droplist",
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        ".version"
      ]
    },
    {
      "page": "dot-PBSadmbEnv",
      "title": "PBSadmb Environment",
      "topics": [
        ".PBSadmbEnv"
      ]
    },
    {
      "page": "editAD",
      "title": "Edit ADMB Files",
      "topics": [
        ".win.editAD",
        ".win.editPLT",
        "editAD",
        "editADfile"
      ]
    },
    {
      "page": "linkAD",
      "title": "Link Object Files to Make an Executable",
      "concept": [
        "ADMB"
      ],
      "topics": [
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        "linkAD"
      ]
    },
    {
      "page": "makeAD",
      "title": "Make an Executable Binary File from a C File",
      "concept": [
        "ADMB"
      ],
      "topics": [
        ".setPath",
        ".win.makeAD",
        "makeAD"
      ]
    },
    {
      "page": "PBSadmb-package",
      "title": "PBS ADMB Package",
      "concept": [
        "ADMB"
      ],
      "topics": [
        "PBSadmb-package",
        "PBSadmb"
      ]
    },
    {
      "page": "plotMC",
      "title": "Plot Results of MCMC Simulation",
      "concept": [
        "MCMC"
      ],
      "topics": [
        ".win.plotMC",
        "plotMC"
      ]
    },
    {
      "page": "readADopts",
      "title": "Read/Write ADMB Options List From/To File",
      "concept": [
        "options"
      ],
      "topics": [
        ".initOptions",
        "readADopts",
        "writeADopts"
      ]
    },
    {
      "page": "readADpaths",
      "title": "Read ADMB Paths From a Text File",
      "concept": [
        "options"
      ],
      "topics": [
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        ".win.saveADpaths",
        "readADpaths",
        "saveADpaths"
      ]
    },
    {
      "page": "readRep",
      "title": "Read an ADMB Report into R Memory",
      "topics": [
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        ".win.viewRep",
        "readRep"
      ]
    },
    {
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      "title": "Run an Executable Binary File",
      "concept": [
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      ],
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        "runAD"
      ]
    },
    {
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      ],
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        ".win.runMC",
        "runMC"
      ]
    },
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      "title": "Create ADMB Options List",
      "concept": [
        "options"
      ],
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        "setADpath",
        "setADver"
      ]
    },
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      "title": "Set Up Paths for PBSadmb",
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      ]
    },
    {
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      "title": "Show All Arguments for ADMB Executable",
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      ],
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        ".win.showGUIargs",
        "showADargs"
      ]
    },
    {
      "page": "startLog",
      "title": "Start a Log File",
      "topics": [
        ".win.startLog",
        "startLog"
      ]
    },
    {
      "page": "suggestPath",
      "title": "Suggest Path to Specified Program",
      "topics": [
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        "suggestPath"
      ]
    }
  ],
  "_readme": "https://github.com/pbs-software/pbs-admb/raw/HEAD/README.md",
  "_rundeps": [
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    "XML"
  ],
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      "source": "PBSadmbIntro.Rnw",
      "filename": "PBSadmbIntro.pdf",
      "title": "Introduction to PBSadmb",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2014-04-08 20:15:39",
      "modified": "2023-11-10 19:03:50",
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