Package: PBSadmb 1.1.7
Rowan Haigh
PBSadmb: ADMB for R Using Scripts or GUI
A collection of software provides R support for 'ADMB' (Automatic Differentiation Model Builder) and a 'GUI' interface facilitates the conversion of 'ADMB' template code to 'C code' followed by compilation to a binary executable. Stand-alone functions can also be run by users not interested in clicking a 'GUI'.
Authors:
PBSadmb_1.1.7.tar.gz
PBSadmb_1.1.7.zip(r-4.5)PBSadmb_1.1.7.zip(r-4.4)PBSadmb_1.1.7.zip(r-4.3)
PBSadmb_1.1.7.tgz(r-4.4-any)PBSadmb_1.1.7.tgz(r-4.3-any)
PBSadmb_1.1.7.tar.gz(r-4.5-noble)PBSadmb_1.1.7.tar.gz(r-4.4-noble)
PBSadmb_1.1.7.tgz(r-4.4-emscripten)PBSadmb_1.1.7.tgz(r-4.3-emscripten)
PBSadmb.pdf |PBSadmb.html✨
PBSadmb/json (API)
| # Install 'PBSadmb' in R: |
| install.packages('PBSadmb', repos = c('https://pbs-software.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pbs-software/pbs-admb/issues
Last updated 7 months agofrom:a3296da0e5. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 04 2024 |
| R-4.5-win | OK | Nov 04 2024 |
| R-4.5-linux | OK | Nov 04 2024 |
| R-4.4-win | OK | Nov 04 2024 |
| R-4.4-mac | OK | Nov 04 2024 |
| R-4.3-win | OK | Nov 04 2024 |
| R-4.3-mac | OK | Nov 04 2024 |
Exports:.addQuotes.asIs.callSys.changeWD.changeWDEnter.chooseCols.cleanUp.cleanUpAgain.cleanWD.doCleanAD.getDirName.initOptions.load.prefix.droplist.normPath.PBSadmbEnv.setPath.version.win.appendLog.win.checkADopts.win.checkADpath.win.checkPrefix.win.cleanAD.win.compAD.win.convAD.win.editAD.win.editPLT.win.findClean.win.findTPL.win.linkAD.win.makeAD.win.plotMC.win.readADpaths.win.readRep.win.run.win.runAD.win.runMC.win.saveADpaths.win.setADpath.win.setADver.win.showADargs.win.showGUIargs.win.startLog.win.suggestPath.win.viewRepadmbalispappendLogatcallatgetatprintatputcheckADoptscleanADcompADconvADconvOScopyFileseditADeditADfilelinkADmakeADplotMCreadADoptsreadADpathsreadReprunADrunMCsaveADpathssetADpathsetADversetupADshowADargsstartLogsuggestPathwriteADopts
Dependencies:PBSmodellingXML
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Start the PBSadmb GUI for ADMB | admb |
| Append Data to Log File | .win.appendLog appendLog |
| Get/Put Objects From/To Temporary Work Environment | alisp atcall atget atprint atput |
| Check ADMB Options for Path Integrity | .win.checkADopts .win.checkADpath checkADopts |
| Clean ADMB-Generated Files from Working Directory | .cleanUp .cleanUpAgain .cleanWD .doCleanAD .win.cleanAD .win.findClean cleanAD |
| Compile C Code | .win.compAD compAD |
| Convert TPL Code to CPP Code | .win.checkPrefix .win.convAD .win.findTPL convAD |
| Convert Text Files to Default OS Format | convOS |
| Copy System Files | copyFiles |
| Miscellaneous Dot Functions | .addQuotes .asIs .callSys .changeWD .changeWDEnter .chooseCols .getDirName .load.prefix.droplist .normPath .version |
| PBSadmb Environment | .PBSadmbEnv |
| Edit ADMB Files | .win.editAD .win.editPLT editAD editADfile |
| Link Object Files to Make an Executable | .win.linkAD linkAD |
| Make an Executable Binary File from a C File | .setPath .win.makeAD makeAD |
| PBS ADMB Package | PBSadmb-package PBSadmb |
| Plot Results of MCMC Simulation | .win.plotMC plotMC |
| Read/Write ADMB Options List From/To File | .initOptions readADopts writeADopts |
| Read ADMB Paths From a Text File | .win.readADpaths .win.saveADpaths readADpaths saveADpaths |
| Read an ADMB Report into R Memory | .win.readRep .win.viewRep readRep |
| Run an Executable Binary File | .win.runAD runAD |
| Run an Executable Binary File in MCMC Mode | .win.run .win.runMC runMC |
| Create ADMB Options List | .win.setADver setADpath setADver |
| Set Up Paths for PBSadmb | setupAD |
| Show All Arguments for ADMB Executable | .win.showADargs .win.showGUIargs showADargs |
| Start a Log File | .win.startLog startLog |
| Suggest Path to Specified Program | .win.suggestPath suggestPath |
